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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88377042_88377690_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88377042 - 88377690
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATAA
5'SS Class:
major
3'SS Sequence:
GCCTCCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TCATCTATCACT
Flanking Amino Acid:
AAVRATNLDGRWNVLMDYCY
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
65
37.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
70.4
0.46
1
63.8
36.9
Minor 5ss
41.7
-0.9
3.2
56.1
48.1
Minor BPS
51.4
0.12
2
73.34
43.6

Associated Gene:

Gene:
ZPLD1
Ensembl Gene ID:
ENSAPLG00000004513
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004638
88365422 - 88385064
19643