Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88377772_88378605_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

88377772 - 88378605

Intron Length:

834

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACATCCT

5'SS Class:

major

3'SS Sequence:

CAACAAAATCTAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTTTCAACA

Flanking Amino Acid:

GDDLRYDLFLSCDKDPQTTI

Intron Amino Acid Position:

254

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.1

68.9

41.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

49.6

-0

37.9

38.3

Minor 5ss

35.1

-1.7

3.2

51.3

45.1

Minor BPS

67.8

0.55

1.4

76.36

34.5

Associated Gene:

Gene:

ZPLD1

Ensembl Gene ID:

ENSAPLG00000004513

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004638

88365422 - 88385064

19643