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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88378778_88380152_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88378778 - 88380152
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
ATTAACTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAACT
Flanking Amino Acid:
RADDCPFLVPICSNRERRDT
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
70.4
0.46
1.1
66.5
44.1
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
70.9
0.73
2
93.33
34.8

Associated Gene:

Gene:
ZPLD1
Ensembl Gene ID:
ENSAPLG00000004513
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004638
88365422 - 88385064
19643