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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88433176_88472602_F

Intron Information:

Intron Rank:
128773
Intron Class:
major
Intron Phase:
Intron Coordinates:
88433176 - 88472602
Intron Length:
39427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGTCTCTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.9
32.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
46.7
-0.3
2.8
66
45.1
Minor BPS
51.2
0.12
2.1
75.95
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025748
88420147 - 88472673
52527