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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88475143_88476242_F

Intron Information:

Intron Rank:
143213
Intron Class:
major
Intron Phase:
Intron Coordinates:
88475143 - 88476242
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
TAATGTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.8
0.6
0.9
70
40.8
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
63.2
0.28
1.6
71.4
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027149
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038902
88474937 - 88485204
10268
ENSAPLT00000031896
88474937 - 88485204
10268