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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88501679_88502209_R

Intron Information:

Intron Rank:
151520
Intron Class:
major
Intron Phase:
Intron Coordinates:
88501679 - 88502209
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
AAGCACTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
86
0.81
0.6
85.4
22
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
60.2
0.4
1.5
70.49
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042968
88499090 - 88502965
3876