Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88538134_88543017_F

Intron Information:

Intron Rank:

141907

Intron Class:

major

Intron Phase:

Intron Coordinates:

88538134 - 88543017

Intron Length:

4884

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGTG

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTGGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAG

U12 Branch Point Sequence:

AAGCTATTAAGG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

78.9

35.3

Major BPS

67.8

0.44

1.5

75.9

36.3

Major PPT

73.8

0.54

68.1

42.3

Minor 5ss

-1.8

3.5

46.6

48.7

Minor BPS

44.5

-0.5

1.9

45.29

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026382

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037187

88537093 - 88543229

6137