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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88590135_88592822_F

Intron Information:

Intron Rank:
138404
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
88590135 - 88592822
Intron Length:
2688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTATGTATC
5'SS Class:
weak_major
3'SS Sequence:
CTGTGCTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
CTGTGCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
70.6
39.7
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
79
0.65
0.9
72
38
Minor 5ss
47.9
-0.2
2.4
63.5
35.1
Minor BPS
53.3
0.1
2.1
66.85
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024500
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038323
88589988 - 88593932
3945