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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88716072_88732134_F

Intron Information:

Intron Rank:
143696
Intron Class:
major
Intron Phase:
Intron Coordinates:
88716072 - 88732134
Intron Length:
16063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTGTTTT
5'SS Class:
major
3'SS Sequence:
TGTATCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
78.6
30.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
71.6
0.49
1.1
71.8
38.2
Minor 5ss
49.2
-0
2.7
70.8
39.9
Minor BPS
54.7
0.23
2.2
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027430
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046154
88715518 - 88738473
22956