Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88732237_88737472_F

Intron Information:

Intron Rank:

143697

Intron Class:

major

Intron Phase:

Intron Coordinates:

88732237 - 88737472

Intron Length:

5236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAAGACT

5'SS Class:

major

3'SS Sequence:

CTCCTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTTAC

U12 Branch Point Sequence:

TTACAGGTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

71.2

38.4

Major BPS

69.2

0.48

37.1

Major PPT

81.9

0.72

0.7

76.4

25.6

Minor 5ss

34.4

-1.8

3.3

46.4

43.2

Minor BPS

41.1

-0.7

2.6

57.54

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027430

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046154

88715518 - 88738473

22956