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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88738238_88740131_R

Intron Information:

Intron Rank:
151178
Intron Class:
major
Intron Phase:
Intron Coordinates:
88738238 - 88740131
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GATCTCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.6
0.6
0.9
76.8
32
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
69.1
0.68
1.2
78.29
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048090
88737114 - 88740939
3826