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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88768108_88768898_F

Intron Information:

Intron Rank:
126463
Intron Class:
major
Intron Phase:
Intron Coordinates:
88768108 - 88768898
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCAA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GAGGTCTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67
40.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
37.2
-1.4
3
47.6
47.8
Minor BPS
51.5
0.04
1.6
57.82
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047670
88768024 - 88771960
3937