Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88795125_88802452_F

Intron Information:

Intron Rank:

126941

Intron Class:

major

Intron Phase:

Intron Coordinates:

88795125 - 88802452

Intron Length:

7328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCTCTG

5'SS Class:

major

3'SS Sequence:

TTCTGTATTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAT

U12 Branch Point Sequence:

GTTTCTGTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.5

0.51

1.2

63.8

47.8

Major BPS

72.1

0.55

1.2

73.3

39.1

Major PPT

77.9

0.63

0.9

70.3

40.1

Minor 5ss

42.3

-0.9

3.1

58.7

45.8

Minor BPS

0.11

2.1

67.55

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018401

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047890

88794940 - 88813981

19042

ENSAPLT00000046180

88794940 - 88811055

16116

ENSAPLT00000028189

88794940 - 88808192

13253