About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88802582_88810055_F

Intron Information:

Intron Rank:
126946
Intron Class:
major
Intron Phase:
Intron Coordinates:
88802582 - 88810055
Intron Length:
7474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.9
81.3
35.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046180
88794940 - 88811055
16116