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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88802582_88876375_F

Intron Information:

Intron Rank:
126944
Intron Class:
major
Intron Phase:
Intron Coordinates:
88802582 - 88876375
Intron Length:
73794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.7
0.85
0.7
90
24.6
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029728
88726625 - 88877527
150903