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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88884488_88902754_F

Intron Information:

Intron Rank:
145206
Intron Class:
major
Intron Phase:
Intron Coordinates:
88884488 - 88902754
Intron Length:
18267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCAACCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TCTGTCTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
69.6
0.44
0.9
61.9
33.5
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
60.8
0.32
1.7
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028299
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019771
88878885 - 88903922
25038