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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88890323_88902754_F

Intron Information:

Intron Rank:
145209
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
88890323 - 88902754
Intron Length:
12432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTCAACCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TCTGTCTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
69.6
0.49
1
59.5
39
Major PPT
69.6
0.44
0.9
61.9
33.5
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
60.8
0.32
1.7
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028299
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020706
88878885 - 88902762
23878