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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88993882_88996752_F

Intron Information:

Intron Rank:
136302
Intron Class:
major
Intron Phase:
Intron Coordinates:
88993882 - 88996752
Intron Length:
2871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GATTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTTCTCTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
79
0.72
1
69
38.9
Major PPT
81.2
0.7
0.9
77.5
36.4
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
61.8
0.45
1.6
79.25
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047174
88991472 - 89002571
11100