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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88996849_89002396_F

Intron Information:

Intron Rank:
136303
Intron Class:
major
Intron Phase:
Intron Coordinates:
88996849 - 89002396
Intron Length:
5548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGCCTGACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
73.5
0.53
1
68.7
37.3
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
48.6
-0.2
2
61.48
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047174
88991472 - 89002571
11100