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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8902096_8907889_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8902096 - 8907889
Intron Length:
5794

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCAAAGGCA
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
GNLAGAEPPSIHPELDTSHH
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
67.5
34
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90
0.9
0.7
85.5
28.4
Minor 5ss
21
-3.3
4.2
33.6
42.2
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014361
8901857 - 8924002
22146