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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89038631_89121491_F

Intron Information:

Intron Rank:
131261
Intron Class:
major
Intron Phase:
Intron Coordinates:
89038631 - 89121491
Intron Length:
82861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTCTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
38.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.5
0.62
0.9
73.9
35.5
Minor 5ss
25.2
-2.9
3.2
30
43.6
Minor BPS
71.8
0.68
1.5
79.46
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020514
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028613
89038445 - 89124108
85664