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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8909139_8922312_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8909139 - 8922312
Intron Length:
13174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GGTAAGGCAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATCCAATG
Flanking Amino Acid:
GFNPNPHITESQYLSCIPTN
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
49.5
-0
1.1
39.6
43.4
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
43.4
-0.6
2
54.24
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014361
8901857 - 8924002
22146