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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89108143_89121491_F

Intron Information:

Intron Rank:
131264
Intron Class:
major
Intron Phase:
Intron Coordinates:
89108143 - 89121491
Intron Length:
13349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCAA
5'SS Class:
major
3'SS Sequence:
TTGTCTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTCTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.3
39.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.5
0.62
0.9
73.9
35.5
Minor 5ss
36.2
-1.6
3.2
47.1
48.3
Minor BPS
71.8
0.68
1.5
79.46
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020514
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033456
89107890 - 89123254
15365