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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89121660_89122065_F

Intron Information:

Intron Rank:
131258
Intron Class:
major
Intron Phase:
Intron Coordinates:
89121660 - 89122065
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
GCTTCTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
67.6
0.44
1.2
75
40
Major PPT
86.3
0.82
0.8
77.9
35.9
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
73.7
0.74
1.1
74.82
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020514
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033456
89107890 - 89123254
15365
ENSAPLT00000028613
89038445 - 89124108
85664
ENSAPLT00000019441
89121580 - 89126342
4763