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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89126675_89135163_R

Intron Information:

Intron Rank:
147467
Intron Class:
major
Intron Phase:
Intron Coordinates:
89126675 - 89135163
Intron Length:
8489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AATTTCTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82.5
0.73
0.9
76.8
37.3
Minor 5ss
30.6
-2.2
2.9
38
41
Minor BPS
52.4
0.15
1.8
71.35
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024601
89125514 - 89135704
10191