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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89172204_89172993_R

Intron Information:

Intron Rank:
132056
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
89172204 - 89172993
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGACCT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCACTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1.1
55
41.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.3
0.77
0.7
83.2
26.9
Minor 5ss
43.6
-0.7
3.1
67.9
42.4
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018283
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029461
89140954 - 89173074
32121