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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89277351_89359481_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89277351 - 89359481
Intron Length:
82131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTAATTATTT
Flanking Amino Acid:
LLLGALCLPPALGLYTVNAI
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
65.9
40.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.7
0.65
0.8
70.7
36.1
Minor 5ss
26.9
-2.7
2.9
33.5
41.8
Minor BPS
49.7
0.06
2
73.99
43

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033371
89277269 - 89392514
115246