About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89277946_89359481_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89277946 - 89359481
Intron Length:
81536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTAATTATTT
Flanking Amino Acid:
CNCVCLVRALALGLYTVNAI
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.7
44.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.7
0.65
0.8
70.7
36.1
Minor 5ss
34.7
-1.7
2.6
34.3
41.4
Minor BPS
49.7
0.06
2
73.99
43

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023189
89276536 - 89390328
113793