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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89316597_89359481_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89316597 - 89359481
Intron Length:
42885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGAAGT
5'SS Class:
major
3'SS Sequence:
GTTTCTCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTAATTATTT
Flanking Amino Acid:
GVEPLLSSSCALGLYTVNAI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
68.2
42.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.7
0.65
0.8
70.7
36.1
Minor 5ss
33.9
-1.8
3.3
45.8
44.4
Minor BPS
49.7
0.06
2
73.99
43

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012565
89316449 - 89392016
75568