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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89359583_89362034_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89359583 - 89362034
Intron Length:
2452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATCCTTTTATT
Flanking Amino Acid:
DGLMFGKWKYEMPNGSPVFI
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.5
0.71
0.8
76.7
30.5
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
62.6
0.48
1.6
78.34
38.2

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023189
89276536 - 89390328
113793
ENSAPLT00000017664
89317924 - 89390328
72405
ENSAPLT00000012565
89316449 - 89392016
75568
ENSAPLT00000033371
89277269 - 89392514
115246