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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89362255_89366321_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89362255 - 89366321
Intron Length:
4067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTTATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCCTATTT
Flanking Amino Acid:
SEEPTIVKVFKQPSQPEILH
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.8
0.6
0.9
74.3
40.5
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
51.4
0.12
1.9
76.97
39.8

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017664
89317924 - 89390328
72405
ENSAPLT00000012565
89316449 - 89392016
75568
ENSAPLT00000033371
89277269 - 89392514
115246
ENSAPLT00000023189
89276536 - 89390328
113793