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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89366866_89367663_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89366866 - 89367663
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
ATTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAACAAT
U12 Branch Point Sequence:
TATGAGTGAAAC
Flanking Amino Acid:
NGRVLQPVEEVVVINLQKTV
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
49.4
-0
1.3
57.1
35.8
Major PPT
88
0.85
0.7
85.4
28.4
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
41.3
-0.6
2.3
54.97
42.4

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033371
89277269 - 89392514
115246
ENSAPLT00000023189
89276536 - 89390328
113793
ENSAPLT00000017664
89317924 - 89390328
72405
ENSAPLT00000012565
89316449 - 89392016
75568