Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89367847_89372029_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

89367847 - 89372029

Intron Length:

4183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTTAT

5'SS Class:

major

3'SS Sequence:

GTTGTTTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTATAT

U12 Branch Point Sequence:

GTTGTTTTCACA

Flanking Amino Acid:

QSDPVVFDVHYPTEKVTIRV

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

77.3

33.6

Major BPS

64.1

0.35

1.2

45.5

Major PPT

81.4

0.71

0.9

75.8

38.1

Minor 5ss

44.8

-0.6

2.9

68.1

42.7

Minor BPS

52.7

0.08

1.8

66.82

40.3

Associated Gene:

Gene:

ALCAM

Ensembl Gene ID:

ENSAPLG00000012031

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023189

89276536 - 89390328

113793

ENSAPLT00000017664

89317924 - 89390328

72405

ENSAPLT00000012565

89316449 - 89392016

75568

ENSAPLT00000033371

89277269 - 89392514

115246