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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89380495_89380570_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89380495 - 89380570
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
AAGTGCTTAAGT
Flanking Amino Acid:
KRKTLKLIVEGKPQIKMTKK
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
85.3
0.79
0.7
78.4
35.6
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
54.5
0.22
2.1
71.31
45.4

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017664
89317924 - 89390328
72405
ENSAPLT00000012565
89316449 - 89392016
75568
ENSAPLT00000033371
89277269 - 89392514
115246
ENSAPLT00000023189
89276536 - 89390328
113793