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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89380705_89381907_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89380705 - 89381907
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CATTTTTTACCT
Flanking Amino Acid:
VTGSGSIINKTEETKYVNGK
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
92.2
19.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.5
0.84
0.7
85
29.6
Minor 5ss
31.7
-2.1
3.9
46.1
36.1
Minor BPS
62.1
0.46
1.6
75.92
41.3

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017664
89317924 - 89390328
72405
ENSAPLT00000012565
89316449 - 89392016
75568
ENSAPLT00000033371
89277269 - 89392514
115246
ENSAPLT00000023189
89276536 - 89390328
113793