About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89382041_89382800_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89382041 - 89382800
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTATTAATT
Flanking Amino Acid:
RTVTSLNVSAISIPEYDEPE
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.4
33.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
33.4
-1.9
2.7
39.9
32.9
Minor BPS
71.1
0.74
1.5
85.74
34

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033371
89277269 - 89392514
115246
ENSAPLT00000023189
89276536 - 89390328
113793
ENSAPLT00000017664
89317924 - 89390328
72405
ENSAPLT00000012565
89316449 - 89392016
75568