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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89383277_89390211_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89383277 - 89390211
Intron Length:
6935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTTCATT
Flanking Amino Acid:
VVYWLYAKKSKTASKHVDKD
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
87.4
26.6
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
86.5
26.1
Minor 5ss
41.1
-1
3.2
58.9
39.4
Minor BPS
61.6
0.45
1.7
79.54
37.3

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012565
89316449 - 89392016
75568
ENSAPLT00000033371
89277269 - 89392514
115246
ENSAPLT00000023189
89276536 - 89390328
113793
ENSAPLT00000017664
89317924 - 89390328
72405