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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89390329_89391934_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
89390329 - 89391934
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
AACTGTTTAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
62.5
0.47
1.8
75.1
41.9

Associated Gene:

Gene:
ALCAM
Ensembl Gene ID:
ENSAPLG00000012031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012565
89316449 - 89392016
75568
ENSAPLT00000033371
89277269 - 89392514
115246