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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89395806_89401430_R

Intron Information:

Intron Rank:
136135
Intron Class:
major
Intron Phase:
Intron Coordinates:
89395806 - 89401430
Intron Length:
5625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
ATCCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GTTCCCTCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.4
41.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
73.3
0.52
0.9
66
35.2
Minor 5ss
47.6
-0.2
2.5
58.3
46.4
Minor BPS
49.5
-0
2
65.09
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018634
89395552 - 89403700
8149