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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89401540_89403670_R

Intron Information:

Intron Rank:
136136
Intron Class:
major
Intron Phase:
Intron Coordinates:
89401540 - 89403670
Intron Length:
2131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAATTC
5'SS Class:
major
3'SS Sequence:
TCTTGCTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATATATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
69.3
36.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.7
0.65
0.9
72.8
36.6
Minor 5ss
40.5
-1.1
3.5
58.5
46.3
Minor BPS
51.7
-0
1.7
56.82
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018634
89395552 - 89403700
8149