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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89426703_89429254_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89426703 - 89429254
Intron Length:
2552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGAATA
5'SS Class:
major
3'SS Sequence:
TTTATTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTCTTTATTA
Flanking Amino Acid:
PSGHELFLHPDPHFDPITGH
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
73.5
37.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86.8
0.83
0.8
81.9
34.3
Minor 5ss
35.8
-1.6
3.3
45.4
44
Minor BPS
69.2
0.6
1.5
77.34
33.8

Associated Gene:

Gene:
CBLB
Ensembl Gene ID:
ENSAPLG00000011898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024461
89419944 - 89553907
133964
ENSAPLT00000018002
89419944 - 89553907
133964
ENSAPLT00000012399
89419944 - 89553907
133964