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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89429393_89430966_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89429393 - 89430966
Intron Length:
1574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTAAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCCTAAATG
Flanking Amino Acid:
EMKKPKHPELGEDTFDSSPP
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
84.1
29.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.9
0.51
1
67.3
37.1
Minor 5ss
39.6
-1.2
3.2
57.9
46.7
Minor BPS
73.7
0.61
1.7
79.08
38

Associated Gene:

Gene:
CBLB
Ensembl Gene ID:
ENSAPLG00000011898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024461
89419944 - 89553907
133964