About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89430869_89430966_R


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
89430869 - 89430966

Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAG|GTGCGTTTT

5'SS Class:
strong_major

3'SS Sequence:
TTGTGTCATTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTGTGAT

U12 Branch Point Sequence:
AAAACATTCACT

Flanking Amino Acid:
EMKKPKHPELGDVYDAPTVP

Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
85.2
0.83
0.9
84.1
29.8

Major BPS
81.2
0.78
1.1
71.4
45.1

Major PPT
76.7
0.6
1
74.3
40.5

Minor 5ss
39.6
-1.2
3.2
57.9
46.7

Minor BPS
48.2
-0
2
67.09
42.6

Associated Gene:

Gene:
CBLB

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

89419944 - 89553907
133964

89419944 - 89553907
133964