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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89431056_89443403_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89431056 - 89443403
Intron Length:
12348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCCTTTTTAATG
Flanking Amino Acid:
LPAASTIPSIKVCENGQCAG
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.7
0.64
0.9
69.5
41.6
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
64.8
0.33
1.3
61.64
41.7

Associated Gene:

Gene:
CBLB
Ensembl Gene ID:
ENSAPLG00000011898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018002
89419944 - 89553907
133964