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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89435986_89443403_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89435986 - 89443403
Intron Length:
7418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCT
Flanking Amino Acid:
LPAASTIPSIKCSLPPANSL
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
70.2
0.46
0.8
64.7
30.8
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
66.4
0.59
1.8
87.9
37.5

Associated Gene:

Gene:
CBLB
Ensembl Gene ID:
ENSAPLG00000011898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024461
89419944 - 89553907
133964
ENSAPLT00000012399
89419944 - 89553907
133964