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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89464535_89466023_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89464535 - 89466023
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTTTGTGATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CATATTTAAACT
Flanking Amino Acid:
QALIDGSREGFYLFPDGRSY
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
70.1
40
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.6
0.64
1
73.7
40.9
Minor 5ss
38.6
-1.3
2.7
49.9
40.1
Minor BPS
52.9
0.17
1.7
68.81
42.5

Associated Gene:

Gene:
CBLB
Ensembl Gene ID:
ENSAPLG00000011898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024461
89419944 - 89553907
133964
ENSAPLT00000018002
89419944 - 89553907
133964
ENSAPLT00000012399
89419944 - 89553907
133964