About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89468264_89472594_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89468264 - 89472594
Intron Length:
4331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
CTGTGTCTAATT
Flanking Amino Acid:
EFDIFTRLFQPWGSILRNWN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
85.8
0.8
0.6
84.7
23
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
48.1
-0
2.1
67.61
44.2

Associated Gene:

Gene:
CBLB
Ensembl Gene ID:
ENSAPLG00000011898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018002
89419944 - 89553907
133964
ENSAPLT00000012399
89419944 - 89553907
133964
ENSAPLT00000024461
89419944 - 89553907
133964