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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89472752_89483912_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89472752 - 89483912
Intron Length:
11161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAAAT
Flanking Amino Acid:
ADFWRKFFGDKTIVPWKVFR
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.3
0.55
0.7
67.7
25.8
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
67.1
0.61
1.7
84.88
34.6

Associated Gene:

Gene:
CBLB
Ensembl Gene ID:
ENSAPLG00000011898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018002
89419944 - 89553907
133964
ENSAPLT00000012399
89419944 - 89553907
133964
ENSAPLT00000024461
89419944 - 89553907
133964