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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89484060_89544339_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89484060 - 89544339
Intron Length:
60280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCCTTATTA
Flanking Amino Acid:
ERMYEEQSQDRRNLTKLSLI
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.7
0.69
0.9
73.6
40.2
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
78.9
0.9
1.4
87.27
31.2

Associated Gene:

Gene:
CBLB
Ensembl Gene ID:
ENSAPLG00000011898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018002
89419944 - 89553907
133964
ENSAPLT00000012399
89419944 - 89553907
133964
ENSAPLT00000024461
89419944 - 89553907
133964