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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89544591_89553748_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89544591 - 89553748
Intron Length:
9158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TTTTTGCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTCTTTTAAAA
Flanking Amino Acid:
EKTWKLMDKVVRLCQNPKLQ
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
63.5
0.42
1.3
70.55
35

Associated Gene:

Gene:
CBLB
Ensembl Gene ID:
ENSAPLG00000011898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012399
89419944 - 89553907
133964
ENSAPLT00000024461
89419944 - 89553907
133964
ENSAPLT00000018002
89419944 - 89553907
133964